RNAscope Assay
Four flexible solutions for all your research needs
Independent of your genes of interest, our easy RNA in situ hybridization assay uses common reagents and protocols; providing universal assay conditions. All RNA-ISH kits contain reagents in a convenient ready-to-use (RTU) format, and chromogenic dyes are available to interrogate a single or two genes simultaneously. Most versatile are our RNAscope® Multiplex Fluorescent Reagent Kits, enabling you to interrogate 1, 2 or 3 genes simultaneously.
Automated RNAscope® ISH assays are also available for Leica Systems (LS) and Ventana Systems (VS).
Which RNAscope® Assay is right for me?
Use the table below to learn more about which RNA in situ hybridization product is right to your research needs.
Assay Type |
Chromogenic |
Chromogenic |
Chromogenic |
Fluorescent |
Dye Used |
Diaminobenzidine (DAB) |
Fast Red |
HRP Green & Fast Red |
TSA-based Opal fluorophores |
RNAscope® Probes Channel Designation |
Channel 1 |
Channel 1 |
Channel 1 & 2 |
Channel 1-4 |
Multiplexing |
Singleplex |
Singleplex |
Singleplex, Duplex |
Single to Fourplex |
Key Benefit |
Robust, sensitive, permanent stain. Most widely used RNAscope assay |
Provides bright color stains with high contrast to background |
Utilizes 2 different staining enzymes therefore avoiding any cross talk between the two stains |
Utilizes up to 4 different spectral channels providing high flexibility |
Ideal for |
First time user Routine applications |
Studies of tissues with endogenous color background such as melanin in skin, liver, or lungs from smokers |
Studies interrogating two RNA biomarkers simultaneously |
Co-localization studies of up to 4 genes simultaneously Experimental application requiring flexibility |
Novel Gene or Unknown Expression |
Compatible |
Compatible |
Compatible |
Compatible |
Archival Specimens |
Compatible |
Compatible |
Compatible |
Compatible |
Microscope Imaging System |
Standard bright field |
Standard bright field Multispectral fluorescent imaging |
Standard bright field |
Multispectral fluorescent imaging |
Sample Type* |
FFPE Tissues(TMAs) |
FFPE Tissues(TMAs) |
FFPE Tissues(TMAs) |
FFPE Tissues(TMAs) |
*Formalin-fixed, paraffin-embedded (FFPE), Tissue-Microarray (TMA)
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a newchromogenic DNAin situhybridization (ISH)technology. DNAscope™ employs the proven “double-Z” probe design and signal amplification system of RNAscope™, enablingrapid and flexi...
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Introducing the highly specific and sensitive miRNAscope™ Assay to detect small RNAs with spatial and morphological context at single-cell resolution. Leveraging ACD’s RNAscope™ co...
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